.
The Open Protein Structure Annotation Network
PDB Keyword
.

PF01894

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF01894 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  1ve01vmf1vmh1vmj1vph
      

    Resources
    Pfam ID: UPF0047 PDB: 1ve0_A
    Solved by: non-psi    
    FFAS:(view)
      Top FFAS hit in PDB: "1xbfA, Clostridium acetobutylicum Q97KL0" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "1vmhA, structural genomics, unknown function ; crystal structure of uncharacterized conserved protein yjbq/upf0047 family, ortholog yugu b.subtilis (15023806) from clostridium acetobutylicum at 1.31 a resolution "
    CATH: CATH Domain E-value CATH Node
      1vmjA00 8.10E-49 2.60.120.460
    FUNFAM (eval=0 ): UPF0047 protein C4A8.02c -like
    PUBSERVER: (view)
      Publications(s) found: 1080
      Publications(s) meeting filtering criteria: 7
    GeneSilico Metaserver
      PDBBLAST PDB: 1vmh_A SCOP : d.273.1.1
      FFAS PDB: 1vmf_A SCOP : d.273.1.1
      MGENTHREADER PDB: 1vmh_A SCOP : d.273.1.1
      PRC PDB: 1vmf_A SCOP : d.273.1.1
      SPARKS PDB: 1vmj_A SCOP : d.273.1.1
      BLASTP PDB: 1vmh_A SCOP : d.273.1.1
      HHBLITS PDB: 2p6c_A SCOP : predicted d.273.1.1
      COMPASS PDB: 1vmf_A SCOP : d.273.1.1
      CSBLAST PDB: 1vmh_A SCOP : d.273.1.1
      HHSEARCH PDB: 2p6c_A SCOP : predicted d.273.1.1
    E.coli Annotations
    NCBI: 16131882 PORTECO PORAL: yjbQ  GeneExpDB: b4056 

    Topsan Members

    Tag pages as 'PF01894' to appear in this list.

    Name Annotation Author(s)
    1vph
    The gene SSO2532 from Sulfolobus solfataricus encodes NP_343872 protein belonging to the UPF0047/DUF74 family (PF01894). A predicted functional partner (score 0.7) for SSO2532 is the pyrI gene that co... pascual (6 edits)
    anton (2 edits)
    1vmf
    The gene BH3498 from Bacillus halodurans encodes the NP_244365 protein from the uncharacterized protein family UPF0047 (PF01894).  The 1vmf structure belongs to the class of alpha and beta proteins (a... anton (2 edits)
    pascual (2 edits)
    1vmh
    The gene CA_C0907 from Clostridium acetobutylicum encodes the NP_347543 protein belonging to the UPF0047 group ( PF01894). Its neighboring gene, CA_C0906 encodes an alanyl-tRNA synthetase related prot... pascual (3 edits)
    chrisx (2 edits)
    anton (1 edits)
    1vmj
    The TM0723 gene of Thermotoga maritima encodes a protein of uncharacterized function (PF01894, COG0432). The family shows a wide species distribution with over 500 sequences in over 400 species includ... tinab (7 edits)

    Summary

    Your annotation here.

    Reviews

    References

     

    No references found.

    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch