The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF04919 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2i5h

    Pfam ID: DUF655 PDB: 2i5h_A
    Solved by: NYSGXRC    
      Top FFAS hit in PDB: "2i5hA, Hypothetical protein AF1531" Top FFAS hit in Pfam: "PF06514, Photosystem II 12 kDa extrinsic protein (PsbU) "
      Top significant hit (PDB90): "2i5hA, structural genomics, unknown function ; crystal structure of a hypothetical protein af1531 from archaeoglobus fulgidus "
      Top significant hit (PFAM25U): "PF12836, Helix-hairpin-helix motif"
    CATH: CATH Domain E-value CATH Node
      3bzcA04 0.0012
      2i5hA02 6.70E-27
      2i5hA01 1.70E-14
    FUNFAM (eval=0.0000029 ): DNA polymerase III subunit alpha -like
    PUBSERVER: (view)
      Publications(s) found: 148
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver
      PDBBLAST PDB: 2i5h_A
      FFAS PDB: 2i5h_A
      BLASTP PDB: 2i5h_A
      HHBLITS PDB: 2i5h_A
      COMPASS PDB: 2i5h_A
      CSBLAST PDB: 2i5h_A
      HHSEARCH PDB: 2i5h_A

    Topsan Members

    Tag pages as 'PF04919' to appear in this list.

    Name Annotation Author(s)


    Pfam family PFAM:PF04919 {Protein of unknown function, DUF655 } with 96 members in NR database and additional 52 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2i5h) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1wg8a1 classified as OB-fold, SAM domain-like fold fold. Profile-profile methods confirm remote homology between this family and superfamily of SAM domain-like fold.




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