The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    Live PFAM
    Name: Accession: PF05708 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2if63kw0

    Pfam ID: DUF830 PDB: 2if6_A
    Solved by: NYSGXRC    
      Top FFAS hit in PDB: "2if6A, Hypothetical protein yiiX" Top FFAS hit in Pfam: "PF07313, Protein of unknown function (DUF1460) "
      Top significant hit (PDB90): "2if6A, structural genomics, unknown function ; crystal structure of hypothetical metalloprotein yiix from escherichia coli o157:h7 "
      Top significant hit (PFAM25U): "PF05382, Bacteriophage peptidoglycan hydrolase"
    CATH: CATH Domain E-value CATH Node
      3gt2A00 0.0023
      2if6A00 3.60E-44
      2k1gA00 0.001 3.90.1720.10
      2p1gA02 0.0067
    FUNFAM (eval=0 ): Uncharacterized lipoprotein yaeF -like
    PUBSERVER: (view)
      Publications(s) found: 460
      Publications(s) meeting filtering criteria: 15
    GeneSilico Metaserver
      PDBBLAST PDB: 2if6_A SCOP : d.3.1.21
      FFAS PDB: 3kw0_A
      MGENTHREADER PDB: 2if6_A SCOP : d.3.1.21
      BLASTP PDB: 2if6_A SCOP : d.3.1.21
      HHBLITS PDB: 3kw0_A
      COMPASS PDB: 2if6_A SCOP : d.3.1.21
      CSBLAST PDB: 2if6_A SCOP : d.3.1.21
      HHSEARCH PDB: 3kw0_A
    E.coli Annotations
    NCBI: 90111098 PORTECO PORAL: yaeF  GeneExpDB: b0193 

    Topsan Members

    Tag pages as 'PF05708' to appear in this list.

    Name Annotation Author(s)
    This protein belongs to DUF830 (PF05708) and belongs to the NlpC/P60 superfamily of papain-like cysteine peptidase. This protein represents a variant of NlpC/P60 domain with permuted topology (see Ana... qxu (4 edits)


    We confirm functional prediction by analyzing the structure and finding the enzymatic catalytic site topology with Cysteine AA.




    No references found.

    Tag page

    Files (0)

    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch