The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF06004 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2jn02k572ra22rb62rd1

    Pfam ID: DUF903 PDB: 2jn0_A
    Solved by: NESG    
      Top FFAS hit in PDB: "2k57A, Putative Lipoprotein" No significant hits in Pfam.
      Top significant hit (PDB90): "2rd1A, structural genomics, unknown function ; x-ray structure of the protein q7cqi7. northeast structural genomics consortium target str87a "
    CATH: CATH Domain E-value CATH Node
      2k57A00 3.80E-15
    FUNFAM (eval=0 ): Small nuclear ribonucleoprotein Sm D1 -like
    PUBSERVER: (view)
      Publications(s) found: 51
      Publications(s) meeting filtering criteria: 3
    GeneSilico Metaserver
      PDBBLAST PDB: 2ra2_A
      FFAS PDB: 2k57_A
      BLASTP PDB: 2ra2_A
      HHBLITS PDB: 2ra2_A
      COMPASS PDB: 2k57_A
      CSBLAST PDB: 2ra2_A
      HHSEARCH PDB: 2ra2_A
    E.coli Annotations
    NCBI: 90111491 PORTECO PORAL: ygdI  GeneExpDB: b2809 

    Topsan Members

    Tag pages as 'PF06004' to appear in this list.

    Name Annotation Author(s)


    Pfam family PFAM:PF06004 {Bacterial protein of unknown function (DUF903)} with 151 members in NR database and additional 5 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2jn0) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1kq1a_ classified as Sm-like fold fold. However, no sequence similarity to this fold has been detected.




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