The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF06006 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2hjj

    Pfam ID: DUF905 PDB: 2hjj_A
    Solved by: NESG    
      Top FFAS hit in PDB: "2hjjA, Hypothetical protein ykfF" No significant hits in Pfam.
      Top significant hit (PDB90): "2hjjA, structural genomics, unknown function ; solution nmr structure of protein ykff from escherichia coli. northeast structural genomics target er397. "
    CATH: CATH Domain E-value CATH Node
      2hjjA00 8.50E-30
    PUBSERVER: (view)
      Publications(s) found: 258
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver
      FFAS PDB: 2hjj_A
      PHYRE PDB: 2hjj_A
      HHBLITS PDB: 2hjj_A
      COMPASS PDB: 2hjj_A
      COMA PDB: 2hjj_A
      HHSEARCH PDB: 2hjj_A
    E.coli Annotations
    NCBI: 16128234 PORTECO PORAL: ykfF  GeneExpDB: b0249 

    Topsan Members

    Tag pages as 'PF06006' to appear in this list.

    Name Annotation Author(s)


    Pfam family PFAM:PF06006 {Bacterial protein of unknown function (DUF905)} with 50 members in NR database and additional 2 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2hjj) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1z1ba1 classified as DNA-binding domain fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds nucleic acids




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