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PDB Keyword
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PF07072

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF07072 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2oez
      

    Resources
    Pfam ID: DUF1342 PDB: 2oez_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "2oezA, UPF0289 protein VP2528" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "2oezA, structural genomics, unknown function ; protein of unknown function (duf1342) from vibrio parahaemolyticus "
    CATH: CATH Domain E-value CATH Node
      2oezA02 7.80E-58 1.10.3900.10
      2oezA01 9.70E-17 2.60.440.10
    PUBSERVER: (view)
      Publications(s) found: 435
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver
      PDBBLAST PDB: 2oez_A
      FFAS PDB: 2oez_A
      MGENTHREADER PDB: 2oez_A
      BLASTP PDB: 2oez_A
      HHBLITS PDB: 2oez_A
      COMPASS PDB: 2oez_A
      COMA PDB: 2oez_A
      CSBLAST PDB: 2oez_A
      HHSEARCH PDB: 2oez_A
    E.coli Annotations
    NCBI: 16128095 PORTECO PORAL: yacF  GeneExpDB: b0102 

    Topsan Members

    Tag pages as 'PF07072' to appear in this list.

    Name Annotation Author(s)
    2oez

    Summary

    Pfam family PFAM:PF07072 {Protein of unknown function (DUF1342) } with 233 members in NR database and additional 118 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2oez) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1pm4a_ classified as YacF-like fold. (Note: new fold solved by PSI, two subdomains: kinked four-helical bundle, inserted into beta-sandwich of 7 strands forming two sheets, probable biological unit is a dimer). However, this partial similarity is not sufficient for fold assignment. Thus it is a novel fold.

    Reviews

    References

     

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