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The Open Protein Structure Annotation Network
PDB Keyword
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PF07237

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF07237 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2okq
      

    Resources
    Pfam ID: DUF1428 PDB: 2okq_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "2okqA, Hypothetical protein ybaA" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "2okqA, structural genomics, unknown function ; crystal structure of unknown conserved ybaa protein from shigella flexneri "
    CATH: CATH Domain E-value CATH Node
      2okqB00 2.00E-41 3.30.70.900
    PUBSERVER: (view)
      Publications(s) found: 324
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver
      FFAS PDB: 2okq_A SCOP : predicted d.58.4.13
      PHYRE PDB: 2okq_A SCOP : predicted d.58.4.13
      HHBLITS PDB: 2okq_A SCOP : predicted d.58.4.13
      COMPASS PDB: 2okq_A SCOP : predicted d.58.4.13
      COMA PDB: 2okq_A SCOP : predicted d.58.4.13
      HHSEARCH PDB: 2okq_A SCOP : predicted d.58.4.13
    E.coli Annotations
    NCBI: 16128440 PORTECO PORAL: ybaA  GeneExpDB: b0456 

    Topsan Members

    Tag pages as 'PF07237' to appear in this list.

    Name Annotation Author(s)
    2okq

    Summary

    Pfam family PFAM:PF07237 {Protein of unknown function (DUF1428) } with 97 members in NR database and additional 34 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2okq) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1iuja_ classified as Ferredoxin-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1iuja_' this fold.

    Reviews

    References

     

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