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PF07350

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF07350 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2csg2dbi2dbn
      

    Resources
    Pfam ID: DUF1479 PDB: 2csg_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "2csgA, putative cytoplasmic protein" Top FFAS hit in Pfam: "PF05721, Phytanoyl-CoA dioxygenase (PhyH) "
    Meta-Basic:
      Top significant hit (PDB90): "2csgA, oxidoreductase ; crystal structure of the putative oxidoreductase from salmonella typhimurium lt2 "
      Top significant hit (PFAM25U): "PF05721, Phytanoyl-CoA dioxygenase (PhyH)"
    CATH: CATH Domain E-value CATH Node
      2a1xA00 3.50E-09
      2dbnA00 2.00E-144 2.60.120.330
      2rdqA00 6.00E-07 2.60.120.620
    PUBSERVER: (view)
      Publications(s) found: 334
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver
      PDBBLAST PDB: 2dbn_A SCOP : predicted b.82.2.12 ECC: predicted 2.8.-.-
      FFAS PDB: 2dbi_A SCOP : predicted b.82.2.12 ECC: predicted 2.8.-.-
      MGENTHREADER PDB: 2csg_A SCOP : predicted b.82.2.12
      PRC PDB: 2csg_A SCOP : predicted b.82.2.12
      BLASTP PDB: 2dbn_A SCOP : predicted b.82.2.12 ECC: predicted 2.8.-.-
      HHBLITS PDB: 2dbn_A SCOP : predicted b.82.2.12 ECC: predicted 2.8.-.-
      COMPASS PDB: 2csg_A SCOP : predicted b.82.2.12
      CSBLAST PDB: 2dbn_A SCOP : predicted b.82.2.12 ECC: predicted 2.8.-.-
      HHSEARCH PDB: 2dbn_A SCOP : predicted b.82.2.12 ECC: predicted 2.8.-.-
    E.coli Annotations
    NCBI: 16128789 PORTECO PORAL: ybiU  GeneExpDB: b0821 

    Topsan Members

    Tag pages as 'PF07350' to appear in this list.

    Name Annotation Author(s)
    2csg

    Summary

    Pfam family PFAM:PF07350 {Protein of unknown function (DUF1479) } with 413 members in NR database and additional 322 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id: TOPSAN:2csg) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1dcsa_ classified as Double-stranded beta-helix fold. Profile-profile methods confirm remote homology between this family and superfamily of Clavaminate synthase-like; Double-stranded beta-helix. Based on remote homology confirmed by the structure, ligands one can hypothesize that this family is putative oxidoreductase; Succinic acid coordinating with FE in the active site

    Reviews

    References

     

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