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PF08681

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF08681 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  1y9b
      

    Resources
    Pfam ID: DUF1778 PDB: 1y9b_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "1y9bA, conserved hypothetical protein" Top FFAS hit in Pfam: "PF01402, Ribbon-helix-helix protein, copG family "
    Meta-Basic:
      Top significant hit (PDB90): "1y9bA, structural genomics, unknown function ; conserverd hypothetical protein from vibrio cholerae o1 biovar eltor str. n16961 "
    CATH: CATH Domain E-value CATH Node
      2an7A00 0.0064
      1y9bB01 2.50E-08 1.10.1220.10
      1y9bA00 3.70E-24 1.20.5.780
      1y9bB02 0.00015 1.20.890.30
    FUNFAM (eval=0 ): Putative uncharacterized protein -like
    PUBSERVER: (view)
      Publications(s) found: 280
      Publications(s) meeting filtering criteria: 3
    GeneSilico Metaserver
      PDBBLAST PDB: 1y9b_A SCOP : predicted a.43.1.9
      FFAS PDB: 1y9b_A SCOP : predicted a.43.1.9
      MGENTHREADER PDB: 1y9b_A SCOP : predicted a.43.1.9
      PRC PDB: 1y9b_A SCOP : predicted a.43.1.9
      HHBLITS PDB: 1y9b_A SCOP : predicted a.43.1.9
      COMPASS PDB: 1y9b_A SCOP : predicted a.43.1.9
      CSBLAST PDB: 1y9b_A SCOP : predicted a.43.1.9
      HHSEARCH PDB: 1y9b_A SCOP : predicted a.43.1.9

    Topsan Members

    Tag pages as 'PF08681' to appear in this list.

    Name Annotation Author(s)
    1y9b

    Summary

    Pfam family PFAM:PF08681 {Protein of unknown function (DUF1778) } with 277 members in NR database and additional 84 members in the metagenomic datasets is represented in Bacteria, Eukaryota, and Viruses. The first structural representative solved (PDB Id: TOPSAN:1y9b) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1u9pa1 classified as Ribbon-helix-helix fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1u9pa1' this fold.

    Reviews

    References

     

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