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The Open Protein Structure Annotation Network
PDB Keyword
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PF08830

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF08830 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  1njh
      

    Resources
    Pfam ID: DUF1806 PDB: 1njh_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "1njhA, protein yojF" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "1njhA, structural genomics, unknown function ; crystal structure of bacillus subtilis yojf protein "
    CATH: CATH Domain E-value CATH Node
      1njhA00 6.50E-49 2.70.180.10
    PUBSERVER: (view)
      Publications(s) found: 133
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver
      PDBBLAST PDB: 1njh_A SCOP : b.128.1.1
      FFAS PDB: 1njh_A SCOP : b.128.1.1
      MGENTHREADER PDB: 1njh_A SCOP : b.128.1.1
      PRC PDB: 1njh_A SCOP : b.128.1.1
      SPARKS PDB: 1njh_A SCOP : b.128.1.1
      BLASTP PDB: 1njh_A SCOP : b.128.1.1
      HHBLITS PDB: 1njh_A SCOP : b.128.1.1
      COMPASS PDB: 1njh_A SCOP : b.128.1.1
      CSBLAST PDB: 1njh_A SCOP : b.128.1.1
      HHSEARCH PDB: 1njh_A SCOP : b.128.1.1

    Topsan Members

    Tag pages as 'PF08830' to appear in this list.

    Name Annotation Author(s)
    1njh

    Summary

    Pfam family PFAM:PF08830 {Protein of unknown function (DUF1806)} with 43 members in NR database and additional 2 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1njh) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1kq1a_ classified as Hypothetical protein yojf; some similarity to N-terminal domain of MutM-like DNA repair proteins fold. (Note: new fold solved by PSI). However, this partial similarity is not sufficient for fold assignment. Thus it is a novel fold.

    Reviews

    References

     

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