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The Open Protein Structure Annotation Network
PDB Keyword
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PF08922

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF08922 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2d9r
      

    Resources
    Pfam ID: DUF1905 PDB: 2d9r_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "2d9rA, conserved hypothetical protein" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "2d9rA, structural genomics, unknown function ; conserved hypothetical protein pg0164 frpm porphyromonas gingivalis [w83] "
    CATH: CATH Domain E-value CATH Node
      2d9rA00 7.50E-21 2.40.30.100
    PUBSERVER: (view)
      Publications(s) found: 105
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver
      PDBBLAST PDB: 2d9r_A SCOP : predicted b.129.2.1
      FFAS PDB: 2d9r_A SCOP : predicted b.129.2.1
      MGENTHREADER PDB: 2d9r_A SCOP : predicted b.129.2.1
      PRC PDB: 2d9r_A SCOP : predicted b.129.2.1
      BLASTP PDB: 2d9r_A SCOP : predicted b.129.2.1
      HHBLITS PDB: 2d9r_A SCOP : predicted b.129.2.1
      COMPASS PDB: 2d9r_A SCOP : predicted b.129.2.1
      CSBLAST PDB: 2d9r_A SCOP : predicted b.129.2.1
      HHSEARCH PDB: 2d9r_A SCOP : predicted b.129.2.1

    Topsan Members

    Tag pages as 'PF08922' to appear in this list.

    Name Annotation Author(s)
    2d9r

    Summary

    Pfam family PFAM:PF08922 {Domain of unknown function (DUF1905) } with 84 members in NR database and additional 58 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2d9r) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1n0ea_ classified as Double-split beta-barrel fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds DNA

    Reviews

    References

     

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