.
The Open Protein Structure Annotation Network
PDB Keyword
.

PF08985

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF08985 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  3n553njf3njg3njh3nji
      

    Resources
    Pfam ID: DUF1888 PDB: 3n55_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "3njiA, Peptidase" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "3njhA, hydrolase ; d37a mutant of so1698 protein, an aspartic peptidase from shewanella oneidensis. "
    CATH: CATH Domain E-value CATH Node
      3n55A00 4.60E-44 2.60.40.420
    PUBSERVER: (view)
      Publications(s) found: 12
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver
      PDBBLAST PDB: 3njn_A
      FFAS PDB: 3n55_A
      MGENTHREADER PDB: 2ai4_A SCOP : predicted b.6.1 ECC: predicted -.-.-.-
      BLASTP PDB: 3njn_A
      HHBLITS PDB: 3njn_A
      COMPASS PDB: 2ai4_A SCOP : predicted b.6.1 ECC: predicted -.-.-.-
      CSBLAST PDB: 3njn_A
      HHSEARCH PDB: 3njn_A

    Topsan Members

    Tag pages as 'PF08985' to appear in this list.

    Name Annotation Author(s)
    3njf

    Summary

    Pfam family PFAM:PF08985 {Domain of unknown function (DUF1888) } with 15 members in NR database and additional 5 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2ai4) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1v54b1 classified as Cupredoxin-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1v54b1' this fold.

    Reviews

    References

     

    No references found.

    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch