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PDB Keyword
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PF09123

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    3. 3. References
    Live PFAM
    Name: Accession: PF09123 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  1r4v1wwi1wws
      

    Resources
    Pfam ID: DUF1931 PDB: 1r4v_A
    Solved by: MCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "1r4vA, Hypothetical protein AQ_328" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "1wwiA, structural genomics, unknown function ; crystal structure of ttk003001566 from thermus thermophilus hb8 "
    CATH: CATH Domain E-value CATH Node
      1wwiA00 1.30E-49
      1f1eA00 0.0098 1.10.20.10
    PUBSERVER: (view)
      Publications(s) found: 36
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver
      PDBBLAST PDB: 1r4v_A SCOP : a.22.1.4
      FFAS PDB: 1wwi_A SCOP : predicted a.22.1.4
      MGENTHREADER PDB: 1wwi_A SCOP : predicted a.22.1.4
      PRC PDB: 1wwi_A SCOP : predicted a.22.1.4
      SPARKS PDB: 1r4v_A SCOP : a.22.1.4
      BLASTP PDB: 1wwi_A SCOP : predicted a.22.1.4
      HHBLITS PDB: 1wwi_A SCOP : predicted a.22.1.4
      COMPASS PDB: 1r4v_A SCOP : a.22.1.4
      COMA PDB: 1wwi_A SCOP : predicted a.22.1.4
      CSBLAST PDB: 1r4v_A SCOP : a.22.1.4
      HHSEARCH PDB: 1wwi_A SCOP : predicted a.22.1.4

    Topsan Members

    Tag pages as 'PF09123' to appear in this list.

    Name Annotation Author(s)
    1r4v

    Summary

    Pfam family PFAM:PF09123 {Domain of unknown function (DUF1931) } with 15 members in NR database and additional 1 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:1r4v) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1f1ea_ classified as Histone-fold fold. Profile-profile methods confirm remote homology between this family and superfamily of Histone-fold; fold of the same name. Based on sequence and structure analysis/ original paper one can hypothesize that this family is possibly a DNA-binding protein that is involved in DNA packaging

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    References

     

    No references found.

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