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PDB Keyword
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PF09171

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF09171 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  1xg71xqo1xqp
      

    Resources
    Pfam ID: DUF1886 PDB: 1xg7_A
    Solved by: SECSG    
    FFAS:(view)
      Top FFAS hit in PDB: "1xg7A, hypothetical protein" No significant hits in Pfam.
    Meta-Basic:
      Top significant hit (PDB90): "1xg7A, structural genomics, unknown function ; conserved hypothetical protein pfu-877259-001 from pyrococcus furiosus "
    CATH: CATH Domain E-value CATH Node
      1xg7B01 5.30E-32 1.10.1670.10
      1xqoA02 8.70E-45 1.10.340.30
    FUNFAM (eval=0 ): N-glycosylase/DNA lyase -like
    PUBSERVER: (view)
      Publications(s) found: 55
      Publications(s) meeting filtering criteria: 2
    GeneSilico Metaserver
      PDBBLAST PDB: 1xqo_A SCOP : a.96.1.6
      FFAS PDB: 1xqo_A SCOP : a.96.1.6
      MGENTHREADER PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      PRC PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      SPARKS PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      BLASTP PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      HHBLITS PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      COMPASS PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      COMA PDB: 1xqo_A SCOP : a.96.1.6
      CSBLAST PDB: 1xg7_A SCOP : a.96.1.6 ECC: predicted 2.8.-.-
      HHSEARCH PDB: 1xqo_A SCOP : a.96.1.6

    Topsan Members

    Tag pages as 'PF09171' to appear in this list.

    Name Annotation Author(s)
    1xg7

    Summary

    Pfam family PFAM:PF09171 {Domain of unknown function (DUF1886) } with 22 members in NR database and additional 1 members in the metagenomic datasets is represented in Archaea. The first structural representative solved (PDB Id: TOPSAN:1xg7) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d2abka_ classified as DNA-glycosylase fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds nucleic acids

    Reviews

    References

     

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