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PF09351

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    Live PFAM
    Name: Accession: PF09351 (PFAM live)
    # sequence matches: # architectures:
    # taxonomy ids: PDB:  2oqm3qth
      

    Resources
    Pfam ID: DUF1993 PDB: 2oqm_A
    Solved by: JCSG    
    FFAS:(view)
      Top FFAS hit in PDB: "2oqmA, Hypothetical protein" Top FFAS hit in Pfam: "PF05163, DinB family "
    Meta-Basic:
      Top significant hit (PDB90): "2oqmA, structural genomics, unknown function ; crystal structure of hypothetical protein (yp_561575.1) from shewanella denitrificans os-217 at 1.83 a resolution "
      Top significant hit (PFAM25U): "PF05163, DinB family"
    CATH: CATH Domain E-value CATH Node
      2oqmB01 6.60E-65 1.20.120.450
    PUBSERVER: (view)
      Publications(s) found: 189
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver
      FFAS PDB: 2oqm_A SCOP : predicted a.213.1.1
      PHYRE PDB: 2oqm_A SCOP : predicted a.213.1.1
      HHBLITS PDB: 2oqm_A SCOP : predicted a.213.1.1
      COMPASS PDB: 2oqm_A SCOP : predicted a.213.1.1
      HHSEARCH PDB: 2oqm_A SCOP : predicted a.213.1.1

    Topsan Members

    Tag pages as 'PF09351' to appear in this list.

    Name Annotation Author(s)
    2oqm
      Gene Sden_0562 from Shewanella denitrificans os-217 encodes the YP_561575 protein from the DUF1993 group (PF09351). SCOP classifies 2oqm in the all alpha class, DinB/YfiT-like putative metalloenzyme... pascual (3 edits)
    agb (1 edits)
    chrisx (1 edits)

    Summary

    Pfam family PFAM:PF09351 {Domain of unknown function (DUF1993) } with 255 members in NR database and additional 147 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id: TOPSAN:2oqm) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1rxqa_ classified as Dinb/yfit-like putative metalloenzymes fold. (Note: new fold solved by PSI). Profile-profile methods confirm remote homology between this family and superfamily of Dinb/yfit-like putative metalloenzymes; fold of the same name. Based on remote homology confirmed by the structure one can hypothesize that this family is probably binds nucleic acids, possibily damage inducible proteins

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