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    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a hypothetical fimbrial assembly protein (BDI_3522) from Parabacteroides distasonis ATCC 8503 at 2.38 A resolution. To be published
    Site JCSG
    PDB Id 3r4r Target Id 394815
    Molecular Characteristics
    Source Parabacteroides distasonis atcc 8503
    Alias Ids TPS25386,YP_001304845.1, 325960 Molecular Weight 32673.03 Da.
    Residues 295 Isoelectric Point 4.82
    Sequence evpigfdtdelsfdmslvlltgdmqtkasdpnytyatteeltiqnchvavfdkdgkriyfknfyskdlg emktignlsgyelqlegvrtfgkedkkvsvlvvanannannspfdnlttydgvdnsytaktiakgpvta sllvkigksettlkynqdnapvtvsliqlsakieytgvykkengellegfsltkvaglnasskitifnt savengafsdlaypttkpvtfytyeisdafkevilsvqsgvepkeypfpankfikgnyyrikglksste iewvlenvedkevtldpfe
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 2
    Resolution (Å) 2.38 Rfree 0.2449
    Matthews' coefficent 2.67 Rfactor 0.2256
    Waters 79 Solvent Content 53.95

    Ligand Information


    Google Scholar output for 3r4r
    1. Homology modeling of class ag protein-coupled receptors.
    S Costanzi - Methods in molecular biology (Clifton, NJ), 2012 - Springer

    Protein Summary

    Topsan Update: This looks like a weak outlier to P_gingi_FimA (PF06321). This family already a traget for that I have come across elsewhere and has been written up for publication (I think).


    Structural analysis obtaine using Dali

         Chain   Z    rmsd lali nres  %id PDB  Description

    1:  3liu-A 15.3  3.1  235   372   15 PDB  MOLECULE: PUTATIVE CELL ADHESION PROTEIN;
    2:  3liu-B 15.2  3.1  233   373   16 PDB  MOLECULE: PUTATIVE CELL ADHESION PROTEIN;
    3:  3gf8-A 12.0  4.2  213   284   14 PDB  MOLECULE: PUTATIVE POLYSACCHARIDE BINDING PROTEINS (DUF1812

    Note that the 3gf8 hit was considered as a putative fimbrial assembly protein (Ref: 2010 Acta Crystallogr.,Sect.F 66: 1281-1286).


    Shown below is a ribbons representation of the structure of target id 394815 color-coded with the N-terminal end in blue and the C-terminal end in red.



    Shown below is a comparison of the structures of target id 394814 (green) and PDB ID 3gf8 (cyan)




    Shown below is a comparison of the structures of target id 394814 (green) and PDB ID 3liu (magenta)



    Ligand Summary




    No references found.

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