The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Site JCSG
    PDB Id 4rho Target Id 373333
    Molecular Characteristics
    Source Burkholderia pseudomallei k96243
    Alias Ids TPS6632,YP_108686.1, BIG_893, 91740 Molecular Weight 26133.24 Da.
    Residues 240 Isoelectric Point 5.41
    Sequence meikamfrdvslssrnfsemlsreskvvaalaaksplmahanwrlkgnsleeatlypafdadgspstpa lavlneeqrgkkhsashaaiwngntrpnegasmschvsdekvlpdrfstrlgvpdcyaksqdladvvtt ivaafnplvveaspegyfdkqvfddkpgvgwmlylpkvitqqqvpearalipvsakgkqtgtiivsvtd apfsvdnpehvaianrieirlvdqdllpayvdi
      BLAST   FFAS

    Structure Determination
    Method Chains
    Resolution (Å) Rfree
    Matthews' coefficent Rfactor
    Waters Solvent Content

    Ligand Information



    Protein Summary

    A search of the Pfam database indicates that the C-terminal half (residues 133-240) belong to the Imm32 Pfam Family (PF15579). There are no structural representatives of this Pfam family in the PDB

    Shown below is a ribbons representation of the structure of target id 373333



    The structure shows a six stranded anit-parallel sheet surrounded by alpha-helices. A pseudo two-fold axis into the plane of this view separates the N and C-terminal halves of the subunit. A DALI search shows that target ID 373333 shows remote structural similarty to PDB ID 3C6K, the human spermidine synthease (Z score=6.5, rmsd=3.9 Ang, length of alignment=103, sequence id=9%). 


    Ligand Summary




    No references found.

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