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The Open Protein Structure Annotation Network
PDB Keyword
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Template:Pathway

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    Pathway

    Reactions found in Metabolic Reconstruction for {{tm}}

    Name: {{rxn['name']}}
    {{var genestr = string.replace(rxn['gene'], '"', ''); var genesnms = string.split(genestr, '+');if (#genesnms > 1) { 'Genes involved in rxn:'; foreach( var gene in genesnms ) { let gene = string.trim(gene); if (gene != args.tmid[0]) {web.link('http://www.topsan.org/explore?tmId='..gene, gene) } else { gene; } ' '; } } }}
    {{var genestr = string.replace(rxn['gene'], '"', ''); var genesnms = string.split(genestr, ','); if (#genesnms > 1) { 'Other genes that carryout this rxn:'; foreach( var gene in genesnms ) { let gene = string.trim(gene); if (gene != args.tmid[0]) {web.link('http://www.topsan.org/explore?tmId='..gene, gene) }  ' '; } } }}
    Metabolic Subsystem: {{ rxn['subsystem'];}}
    Reaction: {{ var compds = rxn['equation']; if (compds) { var cmdlist = string.split(compds, ' '); foreach (var cmpd in cmdlist) { var tcmp = cmpd; let tcmp = string.replace(tcmp, '[c]', ''); let tcmp = string.replace(tcmp, '[e]', ''); if (!string.contains(tcmp, '[') && !string.contains(tcmp, '<') && !string.contains(tcmp, '>') && !string.contains(tcmp, '+') && tcmp != ':') {if (tcmp != '') {var abbrev = tmdb.record("select * from compounds where abbr='"..tcmp.."'"); if (#abbrev > 0) { recon.view('#', string.cast(cmpd), abbrev['name'], abbrev['formula'], abbrev['kegg']);} } } else { cmpd; } } } }}
    Classification: {{var classlist = string.split(rxn['proteinClass'], ','); if (classlist) { foreach( var class in classlist) { if (string.contains(class, 'EC') && !string.contains(class, 'Undetermined')) { let class = string.replace(class, '-', ':'); let class = string.replace(class, '"', ''); var ecval = string.replace(class, 'EC:', ''); note.link('classifiedWith', string.trim(class));  }} } }}
     

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