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The Open Protein Structure Annotation Network
PDB Keyword
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Template:ProteinBak

    Table of contents
    No headers

    {{ wiki.template("ProteinSectionEditing", nil, "jewlSectionEditing") }}

    {{template.bcAlert();}}
    Title {{ args.title; if(args.pubmed && args.pubmed != "") { var abstract = web.html(uri.build('http://www.ncbi.nlm.nih.gov/pubmed/'..string.cast(args.pubmed)), "//_:div[@class='abstract_text']");  if (abstract) {pubmed.widget(uri.build('http://www.ncbi.nlm.nih.gov/pubmed/'..args.pubmed, _, { dopt: 'Abstract' }), 'pubmed', 'http://www.topsan.org/@api/deki/files/7070/=pubmed.PNG', abstract); }} }}
    Site {{ args.site }} Biology Target: {{ Template.bclist{bc:bcparams} }}
    Status {{ args.status }}
    PDB Id {{ args.pdbid }} Target Id {{ note.link('alias', args.targetid) }}
    Related PDB Ids {{rpdb}} 
    Molecular Characteristics
    Source {{ note.link('organism', args.source) }}{{note.link( 'member', 'http://topsan.org/Taxonomy/'..String.replace(args.source, ' ', '_'), false) }}
    Alias Ids {{ note.link('alias', nameAlias, false) }}{{'TPS'..page.id}},{{args.refids}} Molecular Weight {{ note.link( 'molecularWeight', args.molwt) }} Da.
    Residues {{ note.link('residueCount', args.residues) }} Isoelectric Point {{ note.link( 'isoelectricPoint', args.isopoint) }}
    Sequence {{ note.link( 'value', args.sequence) }}
      {{web.link('http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=(none)&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&HITLIST_SIZE=500&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&QUERY='..String.replace(args.sequence, ' ', ''), 'BLAST', 'BLAST', '_blank');}}   {{web.link('http://ffas.burnham.org/ffas-cgi/cgi/ffas.pl?seq='..String.replace(args.sequence, ' ', ''), 'FFAS', '', '_blank'); }}

    {{template.Structure{ method:args.method, numchains:args.numchains, resolution:args.resolution, rfree:args.rfree, mattcoeff:args.mattcoeff, rfactor:args.rfactor, waters:args.waters, solcontent:args.solcontent } }}

    {{ template.Pathway{tmid:tmlist} }}

    Ligand Information
    Ligands {{args.ligands}}
    Metals {{ args.metals }}
    {{structure.image(args.pdbId)}}
    {{jmol.image(args.pdbId, args.model)}}
    Modeled{{ web.image("http://files.topsan.org/images/"..tmlist[0]..".png") }}
    {{web.link('http://ffas.burnham.org/protmod-cgi/tmModels.pl?type=id&id='..tmlist[0], 'Model '..tmlist[0], 'Model '..tmlist[0], '_blank'); }}
    {{ web.link('http://ffas.burnham.org/protmod-cgi/tmModels.pl', 'generated 12/2008', 'models', '_blank'); }}
    Transmembrane protein{{ web.image("http://files.topsan.org/images/"..tmlist[0]..".png", "215", "200") }}

    {{web.link('http://files.topsan.org/TMHMM/'..tm, 'HMM_'..tm, 'HMM_'..tm, '_blank'); }}

    {{template.PDBCompare{pdbid: args.pdbId} }}
     
    {{protein.resources(args.pdbid, args.sequence)}}

    {{note.link( "type", "CORE:Protein", false) }}

    if ( args.uniprot != nil && args.uniprot != '' ) {
        note.link( "sameAs", "UNIPROT:"..args.uniprot, false);
        note.import( 'uniprot:'..args.uniprot );
    }
    if ( args.pdbid != '' && args.pdbid != nil) {
        note.import( 'pdb:'..string.toupper(args.pdbid) );
        note.link("alias",string.toupper(args.pdbid),false);   
        note.link( "sameAs", "PDB:"..string.toupper(args.pdbid), false);
    } 
    if ( args.pubmed != '' && args.pubmed != nil) {
        note.link( "citation", "PMID:"..args.pubmed, false);
    }
    var tags = page.tags; 
    foreach (var tm in tmlist){
       if (tm != '') {
          note.link("sameAs", "http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenePage.cgi?locus="..tm, false);
       }
    }
    foreach(var tag in tags) 
    {
         note.link("seeAlso", "http://purl.topsan.org/Groups/"..String.replace( tag["name"], " ", "_"), false);
    }
    

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