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The Open Protein Structure Annotation Network
PDB Keyword
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Template:ProteinMockUp

    Table of contents
    No headers

    {{ wiki.template("ProteinSectionEditing", nil, "jewlSectionEditing") }}

    Title {{ args.title; if(args.pubmed && args.pubmed != "") { var abstract = web.html(uri.build('http://www.ncbi.nlm.nih.gov/pubmed/'..string.cast(args.pubmed)), "//_:div[@class='abstract_text']"); pubmed.widget(uri.build('http://www.ncbi.nlm.nih.gov/pubmed/'..args.pubmed, _, { dopt: 'Abstract' }), 'pubmed', 'http://www.topsan.org/@api/deki/files/7070/=pubmed.PNG', abstract); } }}
    Site {{ args.site }}
    Status {{ args.status }}
    PDB Id {{ args.pdbid }} Target Id {{ args.targetid }}
    Related PDB Ids {{rpdb}} 
    Molecular Characteristics
    Source {{ args.source }}
    Alias Ids {{ args.refids }} Molecular Weight {{ args.molwt }} Da.
    Residues {{ args.residues }} Isoelectric Point {{ args.isopoint }}
    Sequence {{ args.sequence }}
      {{web.link('http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=(none)&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&HITLIST_SIZE=500&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&QUERY='..args.sequence, 'BLAST', 'BLAST', '_blank');}}   {{web.link('http://ffas.burnham.org/ffas-cgi/cgi/ffas.pl?seq='..args.sequence, 'FFAS', '', '_blank'); }}

    {{template.Structure{ method:args.method, numchains:args.numchains, resolution:args.resolution, rfree:args.rfree, mattcoeff:args.mattcoeff, rfactor:args.rfactor, waters:args.waters, solcontent:args.solcontent } }}

    {{ template.Pathway{tmid:tmlist} }}

    Ligand Information
    Ligands {{ args.ligands }}
    Metals {{ args.metals }}
    {{ web.image("http://files.topsan.org/images/"..args.pdbid..".png") }}
    {{jmol.image(args.pdbId, args.model)}}
    Modeled{{ web.image("http://files.topsan.org/images/"..tmlist[0]..".png") }}
    {{web.link('http://ffas.burnham.org/protmod-cgi/tmModels.pl?type=id&id='..tmlist[0], 'Model '..tmlist[0], 'Model '..tmlist[0], '_blank'); }}
    {{ web.link('http://ffas.burnham.org/protmod-cgi/tmModels.pl', 'generated 12/2008', 'models', '_blank'); }}
    Transmembrane protein{{ web.image("http://files.topsan.org/images/"..tmlist[0]..".png", "215", "200") }}

    {{web.link('http://files.topsan.org/TMHMM/'..tm, 'HMM_'..tm, 'HMM_'..tm, '_blank'); }}

    {{template.PDBCompare{pdbid: args.pdbId} }}
    {{protein.resources(args.pdbid, args.sequence)}}
    {{template.Classification{uniprotId:args.uniprot, pdbId:args.pdbId, sequence:args.sequence} }}

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