.
The Open Protein Structure Annotation Network
PDB Keyword
.

Template:duf

    Table of contents
    No headers
    Resources
    Pfam ID: {{ params.pfid }} PDB: {{ var pdb = string.substr(dufstopdb.pdb_chain, 0, 4); web.link("http://www.rcsb.org/pdb/explore/explore.do?structureId="..pdb, dufstopdb.pdb_chain, "PDB", "_blank"); }}
    Solved by: {{ params.center}} Priority Score: {{ params.score}}
    Member of this family is in PDB.
    Member of this clan is in PDB.
    Co-occurence with annotated domain(s) in one architecture.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    {{ web.link{ uri:'http://hmmer.janelia.org', text: 'HMMER:', title: 'HMMER', target: '_blank'}; }}
      # sequence matches: {{ params.seqhmmr }} # architectures: {{ params.archhmmr}} # taxonomy ids:{{ params.taxhmmr }}
    {{ web.link{ uri:'http://ffas.burnham.org/ffas-cgi/cgi/get_mu.pl?rv=PFAM25U*PDB0811*re*'..args.pfid, text: 'FFAS:', title: 'FFAS', target: '_blank'}; }}
      {{ if(params.ffasPDB != '') { web.html('<font color=\"#808080\">Top FFAS hit in PDB: </font>'); } else { web.html('<font color=\"#808080\">No significant hits in PDB. </font>'); } }} {{ params.ffasPDB}} {{ if(params.ffasPfam != '') { web.html('<font color=\"#808080\">Top FFAS hit in Pfam: </font>'); } else { web.html('<font color=\"#808080\">No significant hits in Pfam. </font>'); } }} {{ params.ffasPfam}}
    {{ web.link{ uri:'http://grdb.bioinfo.pl/pfama25U/'..args.pfid, text: 'GRDB:', title: 'GRDB', target: '_blank'}; }}
      Top significant hit (PDB90): {{params.metapdb}}
      Top significant hit (PFAM25U): {{params.metapfam}}
    CATH: CATH Domain E-value CATH Node
      {{web.link{ uri:'http://www.cathdb.info/domain/'..cathobj.domain, text: cathobj.domain, title: cathobj.domain, target: '_blank'}; }} {{cathobj.eval}} {{web.link{ uri:'http://www.cathdb.info/cathnode/'..cathobj.node, text: cathobj.node, title: cathobj.node, target: '_blank'}; }}
    FUNFAM (eval={{params.funeval}}): {{params.funfam}}
    {{web.link(paramspubserv.link, "PUBSERVER:", "PUBSERVER", "_blank");}}
      Publications(s) found: {{paramspubserv.pubs_found}}
      Publications(s) meeting filtering criteria: {{paramspubserv.pub_refs_num_proteins}}
    {{web.link(genes.uri, "GeneSilico Metaserver:", "GeneSilico Metaserver", "_blank");}} (Login and password: Jamboree)
    {{ var last_var = ''; foreach(var current_db in string.split(i, ",")) { var last_var = ''; foreach(var current_field in string.split(current_db, " ")) { if(last_var == 'PDB:') {var pdb = string.substr(current_field, 0, 4); web.link("http://www.rcsb.org/pdb/explore/explore.do?structureId="..pdb, string.substr(current_field, 0, 6).." ", "PDB", "_blank"); } else {current_field.." ";} let last_var = current_field;} } }}
    E.coli Annotations
    {{web.link("http://www.ncbi.nlm.nih.gov/protein/"..gene_locus.gi, "NCBI:", "NCBI", "_blank");}} {{gene_locus.gi}} {{web.link("http://porteco.org/AjaxSearch.jsp?searchString="..gene_locus.gene_name, "PORTECO PORAL:", "PORTECO PORTAL", "_blank");}} {{gene_locus.gene_name}} {{web.link("http://genexpdb.ou.edu/main/?query="..gene_locus.locus_tag, "GeneExpDB:", "GeneExpDB", "_blank");}} {{gene_locus.locus_tag}}

    Reviews

    References

     

    No references found.

    Tag page
    • No tags

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch